NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,417.5 |
| Mean read quality |
13.0 |
| Median read length |
4,786.0 |
| Median read quality |
14.0 |
| Number of reads |
13.0 |
| Read length N50 |
5,247.0 |
| STDEV read length |
1,821.9 |
| Total bases |
57,428.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13 (100.0%) 0.1Mb |
| >Q7 |
13 (100.0%) 0.1Mb |
| >Q10 |
13 (100.0%) 0.1Mb |
| >Q12 |
11 (84.6%) 0.0Mb |
| >Q15 |
1 (7.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (3071) |
| 2 |
14.8 (6281) |
| 3 |
14.8 (4091) |
| 4 |
14.5 (5128) |
| 5 |
14.4 (6669) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7278 (10.8) |
| 2 |
6669 (14.4) |
| 3 |
6281 (14.8) |
| 4 |
5546 (13.8) |
| 5 |
5247 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot