NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,487.5 |
| Mean read quality |
12.2 |
| Median read length |
1,512.0 |
| Median read quality |
13.5 |
| Number of reads |
360.0 |
| Read length N50 |
1,721.0 |
| STDEV read length |
647.9 |
| Total bases |
535,495.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
360 (100.0%) 0.5Mb |
| >Q7 |
360 (100.0%) 0.5Mb |
| >Q10 |
342 (95.0%) 0.5Mb |
| >Q12 |
260 (72.2%) 0.4Mb |
| >Q15 |
48 (13.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (1527) |
| 2 |
17.4 (1901) |
| 3 |
17.2 (2518) |
| 4 |
17.1 (2095) |
| 5 |
16.8 (1787) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3281 (12.4) |
| 2 |
3114 (11.4) |
| 3 |
3101 (13.7) |
| 4 |
3082 (14.7) |
| 5 |
3059 (14.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot