NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,028.2 |
| Mean read quality |
10.9 |
| Median read length |
563.0 |
| Median read quality |
11.3 |
| Number of reads |
183.0 |
| Read length N50 |
1,680.0 |
| STDEV read length |
741.7 |
| Total bases |
188,154.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
183 (100.0%) 0.2Mb |
| >Q7 |
183 (100.0%) 0.2Mb |
| >Q10 |
156 (85.2%) 0.2Mb |
| >Q12 |
69 (37.7%) 0.1Mb |
| >Q15 |
8 (4.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2315) |
| 2 |
16.1 (1794) |
| 3 |
16.0 (1997) |
| 4 |
15.7 (2035) |
| 5 |
15.6 (1497) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3304 (11.7) |
| 2 |
2671 (15.4) |
| 3 |
2613 (12.6) |
| 4 |
2606 (11.2) |
| 5 |
2592 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot