NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,507.8 |
| Mean read quality |
12.7 |
| Median read length |
2,609.0 |
| Median read quality |
13.6 |
| Number of reads |
155.0 |
| Read length N50 |
2,940.0 |
| STDEV read length |
868.4 |
| Total bases |
388,713.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
155 (100.0%) 0.4Mb |
| >Q7 |
155 (100.0%) 0.4Mb |
| >Q10 |
152 (98.1%) 0.4Mb |
| >Q12 |
127 (81.9%) 0.3Mb |
| >Q15 |
27 (17.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (3300) |
| 2 |
16.9 (1922) |
| 3 |
16.9 (3299) |
| 4 |
16.6 (3021) |
| 5 |
16.4 (3005) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4351 (14.5) |
| 2 |
4000 (14.2) |
| 3 |
3990 (15.1) |
| 4 |
3982 (12.5) |
| 5 |
3969 (15.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot