NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,967.8 |
| Mean read quality |
12.5 |
| Median read length |
2,010.0 |
| Median read quality |
13.7 |
| Number of reads |
914.0 |
| Read length N50 |
2,251.0 |
| STDEV read length |
822.7 |
| Total bases |
1,798,582.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
914 (100.0%) 1.8Mb |
| >Q7 |
914 (100.0%) 1.8Mb |
| >Q10 |
877 (96.0%) 1.8Mb |
| >Q12 |
698 (76.4%) 1.5Mb |
| >Q15 |
197 (21.6%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (1848) |
| 2 |
17.8 (2107) |
| 3 |
17.7 (2011) |
| 4 |
17.4 (2081) |
| 5 |
17.4 (2412) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6217 (14.7) |
| 2 |
5375 (14.3) |
| 3 |
4993 (13.7) |
| 4 |
4802 (13.0) |
| 5 |
4766 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot