NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,607.6 |
| Mean read quality |
11.0 |
| Median read length |
1,360.0 |
| Median read quality |
11.5 |
| Number of reads |
38.0 |
| Read length N50 |
2,567.0 |
| STDEV read length |
1,199.3 |
| Total bases |
61,090.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38 (100.0%) 0.1Mb |
| >Q7 |
38 (100.0%) 0.1Mb |
| >Q10 |
34 (89.5%) 0.1Mb |
| >Q12 |
13 (34.2%) 0.0Mb |
| >Q15 |
2 (5.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (1190) |
| 2 |
15.5 (3473) |
| 3 |
14.6 (2688) |
| 4 |
14.5 (2563) |
| 5 |
14.1 (2823) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3677 (13.6) |
| 2 |
3536 (10.0) |
| 3 |
3482 (12.0) |
| 4 |
3473 (15.5) |
| 5 |
3405 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot