NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,178.3 |
| Mean read quality |
12.3 |
| Median read length |
2,137.5 |
| Median read quality |
13.2 |
| Number of reads |
2,574.0 |
| Read length N50 |
2,279.0 |
| STDEV read length |
564.7 |
| Total bases |
5,607,020.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2574 (100.0%) 5.6Mb |
| >Q7 |
2574 (100.0%) 5.6Mb |
| >Q10 |
2506 (97.4%) 5.5Mb |
| >Q12 |
1958 (76.1%) 4.3Mb |
| >Q15 |
289 (11.2%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (2119) |
| 2 |
17.8 (2450) |
| 3 |
17.2 (2437) |
| 4 |
17.2 (2222) |
| 5 |
17.2 (1754) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6232 (9.6) |
| 2 |
5753 (13.4) |
| 3 |
5584 (10.9) |
| 4 |
4913 (13.9) |
| 5 |
4811 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot