NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,494.5 |
| Mean read quality |
11.8 |
| Median read length |
1,489.0 |
| Median read quality |
12.8 |
| Number of reads |
311.0 |
| Read length N50 |
1,661.0 |
| STDEV read length |
604.3 |
| Total bases |
464,788.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
311 (100.0%) 0.5Mb |
| >Q7 |
311 (100.0%) 0.5Mb |
| >Q10 |
291 (93.6%) 0.4Mb |
| >Q12 |
213 (68.5%) 0.3Mb |
| >Q15 |
19 (6.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (1286) |
| 2 |
16.7 (1533) |
| 3 |
16.5 (2196) |
| 4 |
16.4 (1781) |
| 5 |
16.1 (1966) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4288 (12.9) |
| 2 |
3889 (13.9) |
| 3 |
3336 (13.0) |
| 4 |
3158 (13.7) |
| 5 |
3076 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot