NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,271.8 |
| Mean read quality |
12.8 |
| Median read length |
2,249.0 |
| Median read quality |
13.8 |
| Number of reads |
5,310.0 |
| Read length N50 |
2,409.0 |
| STDEV read length |
651.3 |
| Total bases |
12,063,402.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5310 (100.0%) 12.1Mb |
| >Q7 |
5310 (100.0%) 12.1Mb |
| >Q10 |
5182 (97.6%) 11.8Mb |
| >Q12 |
4441 (83.6%) 10.2Mb |
| >Q15 |
1179 (22.2%) 2.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (3789) |
| 2 |
18.5 (2235) |
| 3 |
18.3 (2512) |
| 4 |
18.2 (2277) |
| 5 |
17.9 (2308) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6068 (14.4) |
| 2 |
5547 (15.0) |
| 3 |
5488 (14.6) |
| 4 |
5253 (15.0) |
| 5 |
5177 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot