NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,356.2 |
| Mean read quality |
13.2 |
| Median read length |
2,320.0 |
| Median read quality |
14.2 |
| Number of reads |
27,652.0 |
| Read length N50 |
2,411.0 |
| STDEV read length |
488.8 |
| Total bases |
65,152,369.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
27652 (100.0%) 65.2Mb |
| >Q7 |
27652 (100.0%) 65.2Mb |
| >Q10 |
27190 (98.3%) 64.1Mb |
| >Q12 |
24303 (87.9%) 57.6Mb |
| >Q15 |
8230 (29.8%) 20.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (2652) |
| 2 |
18.7 (2670) |
| 3 |
18.6 (2642) |
| 4 |
18.6 (2163) |
| 5 |
18.4 (2339) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7073 (14.0) |
| 2 |
7054 (9.4) |
| 3 |
5707 (15.2) |
| 4 |
5578 (12.9) |
| 5 |
5445 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot