NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,288.6 |
| Mean read quality |
12.9 |
| Median read length |
2,244.0 |
| Median read quality |
13.9 |
| Number of reads |
12,970.0 |
| Read length N50 |
2,409.0 |
| STDEV read length |
651.1 |
| Total bases |
29,682,604.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12970 (100.0%) 29.7Mb |
| >Q7 |
12970 (100.0%) 29.7Mb |
| >Q10 |
12720 (98.1%) 29.1Mb |
| >Q12 |
11018 (84.9%) 25.4Mb |
| >Q15 |
2831 (21.8%) 6.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (2733) |
| 2 |
17.9 (2250) |
| 3 |
17.9 (2329) |
| 4 |
17.8 (3438) |
| 5 |
17.8 (2516) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8997 (15.1) |
| 2 |
6136 (9.7) |
| 3 |
5929 (13.9) |
| 4 |
5389 (14.6) |
| 5 |
5326 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot