NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,581.5 |
| Mean read quality |
13.0 |
| Median read length |
2,546.0 |
| Median read quality |
14.0 |
| Number of reads |
52,498.0 |
| Read length N50 |
2,689.0 |
| STDEV read length |
646.6 |
| Total bases |
135,522,415.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
52498 (100.0%) 135.5Mb |
| >Q7 |
52498 (100.0%) 135.5Mb |
| >Q10 |
51588 (98.3%) 133.3Mb |
| >Q12 |
45408 (86.5%) 118.1Mb |
| >Q15 |
13651 (26.0%) 36.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (3895) |
| 2 |
19.3 (2554) |
| 3 |
19.1 (3531) |
| 4 |
18.9 (2909) |
| 5 |
18.8 (2811) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13526 (14.8) |
| 2 |
10343 (15.0) |
| 3 |
9204 (12.1) |
| 4 |
8966 (13.8) |
| 5 |
8412 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot