NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,850.9 |
| Mean read quality |
13.1 |
| Median read length |
1,838.5 |
| Median read quality |
14.2 |
| Number of reads |
488.0 |
| Read length N50 |
1,917.0 |
| STDEV read length |
378.2 |
| Total bases |
903,248.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
488 (100.0%) 0.9Mb |
| >Q7 |
488 (100.0%) 0.9Mb |
| >Q10 |
477 (97.7%) 0.9Mb |
| >Q12 |
424 (86.9%) 0.8Mb |
| >Q15 |
138 (28.3%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (2640) |
| 2 |
17.9 (1656) |
| 3 |
17.3 (2292) |
| 4 |
17.2 (1827) |
| 5 |
17.0 (1661) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2971 (14.2) |
| 2 |
2806 (12.7) |
| 3 |
2792 (16.2) |
| 4 |
2752 (14.2) |
| 5 |
2724 (15.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot