NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,619.4 |
| Mean read quality |
12.5 |
| Median read length |
3,425.0 |
| Median read quality |
13.7 |
| Number of reads |
107.0 |
| Read length N50 |
3,851.0 |
| STDEV read length |
1,726.4 |
| Total bases |
280,280.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
107 (100.0%) 0.3Mb |
| >Q7 |
107 (100.0%) 0.3Mb |
| >Q10 |
102 (95.3%) 0.3Mb |
| >Q12 |
76 (71.0%) 0.2Mb |
| >Q15 |
26 (24.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (3639) |
| 2 |
18.5 (3334) |
| 3 |
17.4 (4848) |
| 4 |
17.4 (3497) |
| 5 |
17.3 (3629) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5451 (13.8) |
| 2 |
5339 (13.3) |
| 3 |
5266 (15.7) |
| 4 |
5057 (15.9) |
| 5 |
4961 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot