NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,484.3 |
| Mean read quality |
13.1 |
| Median read length |
2,492.0 |
| Median read quality |
14.2 |
| Number of reads |
3,959.0 |
| Read length N50 |
2,653.0 |
| STDEV read length |
669.6 |
| Total bases |
9,835,498.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3959 (100.0%) 9.8Mb |
| >Q7 |
3959 (100.0%) 9.8Mb |
| >Q10 |
3885 (98.1%) 9.7Mb |
| >Q12 |
3382 (85.4%) 8.6Mb |
| >Q15 |
1283 (32.4%) 3.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (2987) |
| 2 |
18.9 (3236) |
| 3 |
18.8 (2807) |
| 4 |
18.6 (2119) |
| 5 |
18.6 (2377) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6078 (10.5) |
| 2 |
5563 (13.8) |
| 3 |
4955 (13.9) |
| 4 |
4689 (13.8) |
| 5 |
4643 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot