NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,635.1 |
| Mean read quality |
12.7 |
| Median read length |
1,751.5 |
| Median read quality |
13.6 |
| Number of reads |
454.0 |
| Read length N50 |
2,368.0 |
| STDEV read length |
997.2 |
| Total bases |
742,344.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
454 (100.0%) 0.7Mb |
| >Q7 |
454 (100.0%) 0.7Mb |
| >Q10 |
447 (98.5%) 0.7Mb |
| >Q12 |
359 (79.1%) 0.6Mb |
| >Q15 |
108 (23.8%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (1682) |
| 2 |
17.9 (2870) |
| 3 |
17.5 (3396) |
| 4 |
17.4 (2979) |
| 5 |
17.4 (2998) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3982 (14.3) |
| 2 |
3710 (16.1) |
| 3 |
3695 (15.7) |
| 4 |
3638 (11.1) |
| 5 |
3629 (16.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot