NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,877.1 |
| Mean read quality |
12.7 |
| Median read length |
2,965.0 |
| Median read quality |
13.7 |
| Number of reads |
651.0 |
| Read length N50 |
3,096.0 |
| STDEV read length |
779.9 |
| Total bases |
1,873,007.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
651 (100.0%) 1.9Mb |
| >Q7 |
651 (100.0%) 1.9Mb |
| >Q10 |
631 (96.9%) 1.8Mb |
| >Q12 |
529 (81.3%) 1.6Mb |
| >Q15 |
127 (19.5%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (3538) |
| 2 |
17.0 (3015) |
| 3 |
16.9 (2727) |
| 4 |
16.9 (2928) |
| 5 |
16.8 (4067) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5466 (13.8) |
| 2 |
4696 (12.9) |
| 3 |
4565 (14.7) |
| 4 |
4562 (11.4) |
| 5 |
4537 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot