NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,510.0 |
| Mean read quality |
12.6 |
| Median read length |
2,540.0 |
| Median read quality |
13.8 |
| Number of reads |
79.0 |
| Read length N50 |
3,391.0 |
| STDEV read length |
1,415.7 |
| Total bases |
198,288.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
79 (100.0%) 0.2Mb |
| >Q7 |
79 (100.0%) 0.2Mb |
| >Q10 |
76 (96.2%) 0.2Mb |
| >Q12 |
57 (72.2%) 0.2Mb |
| >Q15 |
18 (22.8%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (2359) |
| 2 |
17.8 (2404) |
| 3 |
17.8 (2407) |
| 4 |
17.1 (3641) |
| 5 |
16.9 (4536) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6521 (13.4) |
| 2 |
5183 (14.2) |
| 3 |
5019 (11.5) |
| 4 |
4636 (15.7) |
| 5 |
4537 (16.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot