NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,584.7 |
| Mean read quality |
13.5 |
| Median read length |
3,528.0 |
| Median read quality |
14.5 |
| Number of reads |
333.0 |
| Read length N50 |
3,883.0 |
| STDEV read length |
1,091.6 |
| Total bases |
1,193,692.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
333 (100.0%) 1.2Mb |
| >Q7 |
333 (100.0%) 1.2Mb |
| >Q10 |
324 (97.3%) 1.2Mb |
| >Q12 |
294 (88.3%) 1.1Mb |
| >Q15 |
125 (37.5%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (5044) |
| 2 |
18.9 (3097) |
| 3 |
18.8 (2041) |
| 4 |
18.5 (3428) |
| 5 |
18.4 (3898) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6691 (14.0) |
| 2 |
6153 (15.2) |
| 3 |
5935 (15.8) |
| 4 |
5888 (15.7) |
| 5 |
5779 (14.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot