NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,220.7 |
| Mean read quality |
12.7 |
| Median read length |
2,160.0 |
| Median read quality |
13.6 |
| Number of reads |
1,290.0 |
| Read length N50 |
2,933.0 |
| STDEV read length |
1,252.0 |
| Total bases |
2,864,683.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1290 (100.0%) 2.9Mb |
| >Q7 |
1290 (100.0%) 2.9Mb |
| >Q10 |
1258 (97.5%) 2.8Mb |
| >Q12 |
1057 (81.9%) 2.4Mb |
| >Q15 |
221 (17.1%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (2886) |
| 2 |
17.8 (4943) |
| 3 |
17.8 (3242) |
| 4 |
17.5 (2094) |
| 5 |
17.5 (3463) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7214 (14.1) |
| 2 |
6614 (11.6) |
| 3 |
6367 (15.7) |
| 4 |
5769 (14.3) |
| 5 |
5749 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot