NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
641.0 |
| Mean read quality |
10.4 |
| Median read length |
427.0 |
| Median read quality |
10.8 |
| Number of reads |
647.0 |
| Read length N50 |
541.0 |
| STDEV read length |
645.2 |
| Total bases |
414,726.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
647 (100.0%) 0.4Mb |
| >Q7 |
647 (100.0%) 0.4Mb |
| >Q10 |
517 (79.9%) 0.4Mb |
| >Q12 |
116 (17.9%) 0.2Mb |
| >Q15 |
21 (3.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (2148) |
| 2 |
16.9 (2179) |
| 3 |
16.9 (2054) |
| 4 |
16.9 (1933) |
| 5 |
16.5 (3295) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4725 (10.6) |
| 2 |
4234 (14.2) |
| 3 |
3925 (14.2) |
| 4 |
3816 (15.6) |
| 5 |
3572 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot