NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,145.6 |
| Mean read quality |
13.9 |
| Median read length |
3,292.5 |
| Median read quality |
14.9 |
| Number of reads |
168.0 |
| Read length N50 |
3,444.0 |
| STDEV read length |
1,120.5 |
| Total bases |
528,458.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
168 (100.0%) 0.5Mb |
| >Q7 |
168 (100.0%) 0.5Mb |
| >Q10 |
168 (100.0%) 0.5Mb |
| >Q12 |
155 (92.3%) 0.5Mb |
| >Q15 |
80 (47.6%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (3371) |
| 2 |
18.7 (3444) |
| 3 |
18.6 (4016) |
| 4 |
18.4 (3527) |
| 5 |
17.7 (3594) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5729 (14.7) |
| 2 |
5676 (13.3) |
| 3 |
5605 (17.1) |
| 4 |
5383 (17.0) |
| 5 |
4977 (16.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot