NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,332.4 |
| Mean read quality |
12.3 |
| Median read length |
3,243.0 |
| Median read quality |
13.3 |
| Number of reads |
39,006.0 |
| Read length N50 |
3,437.0 |
| STDEV read length |
854.1 |
| Total bases |
129,985,536.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
39006 (100.0%) 130.0Mb |
| >Q7 |
39006 (100.0%) 130.0Mb |
| >Q10 |
37070 (95.0%) 123.6Mb |
| >Q12 |
30771 (78.9%) 103.1Mb |
| >Q15 |
4535 (11.6%) 15.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (3401) |
| 2 |
18.8 (2990) |
| 3 |
18.6 (3930) |
| 4 |
18.3 (2208) |
| 5 |
18.2 (2857) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10234 (13.0) |
| 2 |
10080 (14.1) |
| 3 |
9914 (14.1) |
| 4 |
9794 (12.8) |
| 5 |
9623 (14.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot