NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,340.8 |
| Mean read quality |
11.8 |
| Median read length |
3,261.0 |
| Median read quality |
12.8 |
| Number of reads |
21,124.0 |
| Read length N50 |
3,453.0 |
| STDEV read length |
843.0 |
| Total bases |
70,571,952.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
21124 (100.0%) 70.6Mb |
| >Q7 |
21124 (100.0%) 70.6Mb |
| >Q10 |
19813 (93.8%) 66.2Mb |
| >Q12 |
14732 (69.7%) 49.5Mb |
| >Q15 |
782 (3.7%) 2.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (2490) |
| 2 |
18.8 (2428) |
| 3 |
18.6 (2713) |
| 4 |
18.5 (2694) |
| 5 |
18.4 (5269) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11858 (9.7) |
| 2 |
11225 (12.9) |
| 3 |
10563 (12.3) |
| 4 |
10123 (13.1) |
| 5 |
9628 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot