NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,618.1 |
| Mean read quality |
11.9 |
| Median read length |
3,517.0 |
| Median read quality |
13.0 |
| Number of reads |
15,901.0 |
| Read length N50 |
3,720.0 |
| STDEV read length |
902.4 |
| Total bases |
57,530,913.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15901 (100.0%) 57.5Mb |
| >Q7 |
15901 (100.0%) 57.5Mb |
| >Q10 |
14904 (93.7%) 54.0Mb |
| >Q12 |
11383 (71.6%) 41.5Mb |
| >Q15 |
681 (4.3%) 2.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (2969) |
| 2 |
17.7 (3085) |
| 3 |
17.5 (5118) |
| 4 |
17.4 (4167) |
| 5 |
17.3 (3638) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10547 (11.5) |
| 2 |
10494 (12.5) |
| 3 |
9767 (12.2) |
| 4 |
9690 (13.3) |
| 5 |
9357 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot