NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,312.9 |
| Mean read quality |
11.5 |
| Median read length |
3,233.0 |
| Median read quality |
12.4 |
| Number of reads |
28,409.0 |
| Read length N50 |
3,403.0 |
| STDEV read length |
804.8 |
| Total bases |
94,115,881.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28409 (100.0%) 94.1Mb |
| >Q7 |
28409 (100.0%) 94.1Mb |
| >Q10 |
26010 (91.6%) 86.3Mb |
| >Q12 |
17164 (60.4%) 57.2Mb |
| >Q15 |
708 (2.5%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.8 (2544) |
| 2 |
17.4 (2903) |
| 3 |
17.4 (3964) |
| 4 |
17.3 (2567) |
| 5 |
17.3 (2529) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12122 (14.2) |
| 2 |
10396 (8.0) |
| 3 |
10362 (12.9) |
| 4 |
9947 (13.6) |
| 5 |
9941 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot