NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,603.6 |
| Mean read quality |
11.6 |
| Median read length |
3,543.0 |
| Median read quality |
12.6 |
| Number of reads |
9,391.0 |
| Read length N50 |
3,710.0 |
| STDEV read length |
840.8 |
| Total bases |
33,841,706.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9391 (100.0%) 33.8Mb |
| >Q7 |
9391 (100.0%) 33.8Mb |
| >Q10 |
8607 (91.7%) 31.0Mb |
| >Q12 |
6188 (65.9%) 22.4Mb |
| >Q15 |
116 (1.2%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (5013) |
| 2 |
16.1 (3240) |
| 3 |
16.1 (3408) |
| 4 |
16.0 (4005) |
| 5 |
16.0 (5080) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10651 (12.8) |
| 2 |
9864 (12.1) |
| 3 |
9624 (10.2) |
| 4 |
9610 (13.2) |
| 5 |
9534 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot