NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,331.4 |
| Mean read quality |
11.5 |
| Median read length |
3,249.0 |
| Median read quality |
12.6 |
| Number of reads |
7,580.0 |
| Read length N50 |
3,480.0 |
| STDEV read length |
942.6 |
| Total bases |
25,251,637.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7580 (100.0%) 25.3Mb |
| >Q7 |
7580 (100.0%) 25.3Mb |
| >Q10 |
6989 (92.2%) 23.4Mb |
| >Q12 |
4805 (63.4%) 16.3Mb |
| >Q15 |
138 (1.8%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (3890) |
| 2 |
16.7 (3569) |
| 3 |
16.7 (3653) |
| 4 |
16.5 (3399) |
| 5 |
16.4 (3264) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9207 (13.3) |
| 2 |
9148 (12.1) |
| 3 |
9130 (12.7) |
| 4 |
8858 (11.4) |
| 5 |
8765 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot