NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,752.2 |
| Mean read quality |
11.1 |
| Median read length |
2,565.0 |
| Median read quality |
12.1 |
| Number of reads |
15,132.0 |
| Read length N50 |
3,277.0 |
| STDEV read length |
1,529.7 |
| Total bases |
41,646,887.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15132 (100.0%) 41.6Mb |
| >Q7 |
15132 (100.0%) 41.6Mb |
| >Q10 |
12911 (85.3%) 35.2Mb |
| >Q12 |
8006 (52.9%) 22.1Mb |
| >Q15 |
176 (1.2%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (3868) |
| 2 |
17.0 (1915) |
| 3 |
16.8 (3605) |
| 4 |
16.6 (831) |
| 5 |
16.4 (2813) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18064 (13.4) |
| 2 |
16216 (12.5) |
| 3 |
15114 (13.6) |
| 4 |
14744 (12.0) |
| 5 |
14644 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot