NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,208.4 |
| Mean read quality |
11.7 |
| Median read length |
1,812.0 |
| Median read quality |
12.8 |
| Number of reads |
9,563.0 |
| Read length N50 |
3,105.0 |
| STDEV read length |
1,453.9 |
| Total bases |
21,118,582.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9563 (100.0%) 21.1Mb |
| >Q7 |
9563 (100.0%) 21.1Mb |
| >Q10 |
8689 (90.9%) 19.1Mb |
| >Q12 |
6532 (68.3%) 14.9Mb |
| >Q15 |
435 (4.5%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (1110) |
| 2 |
17.6 (8165) |
| 3 |
17.2 (3071) |
| 4 |
17.0 (3853) |
| 5 |
16.9 (1805) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12326 (8.8) |
| 2 |
11898 (9.3) |
| 3 |
10909 (14.0) |
| 4 |
10654 (9.2) |
| 5 |
10129 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot