NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,633.0 |
| Mean read quality |
11.3 |
| Median read length |
3,552.5 |
| Median read quality |
12.3 |
| Number of reads |
7,584.0 |
| Read length N50 |
3,780.0 |
| STDEV read length |
981.7 |
| Total bases |
27,552,929.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7584 (100.0%) 27.6Mb |
| >Q7 |
7584 (100.0%) 27.6Mb |
| >Q10 |
6884 (90.8%) 25.0Mb |
| >Q12 |
4452 (58.7%) 16.4Mb |
| >Q15 |
34 (0.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (5629) |
| 2 |
16.6 (3700) |
| 3 |
16.4 (4779) |
| 4 |
16.1 (5291) |
| 5 |
15.9 (3231) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11137 (12.4) |
| 2 |
9777 (11.5) |
| 3 |
9582 (12.3) |
| 4 |
9562 (12.3) |
| 5 |
9458 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot