NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,676.0 |
| Mean read quality |
12.0 |
| Median read length |
2,640.5 |
| Median read quality |
13.0 |
| Number of reads |
6,022.0 |
| Read length N50 |
2,945.0 |
| STDEV read length |
960.9 |
| Total bases |
16,115,056.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6022 (100.0%) 16.1Mb |
| >Q7 |
6022 (100.0%) 16.1Mb |
| >Q10 |
5682 (94.4%) 15.2Mb |
| >Q12 |
4296 (71.3%) 11.6Mb |
| >Q15 |
367 (6.1%) 1.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (4118) |
| 2 |
17.6 (2375) |
| 3 |
17.5 (4260) |
| 4 |
17.5 (4063) |
| 5 |
17.3 (1922) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7004 (11.8) |
| 2 |
6614 (12.4) |
| 3 |
6565 (11.5) |
| 4 |
6555 (12.7) |
| 5 |
6551 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot