NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,003.7 |
| Mean read quality |
11.0 |
| Median read length |
3,904.0 |
| Median read quality |
11.9 |
| Number of reads |
7,822.0 |
| Read length N50 |
4,129.0 |
| STDEV read length |
1,018.7 |
| Total bases |
31,316,710.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7822 (100.0%) 31.3Mb |
| >Q7 |
7822 (100.0%) 31.3Mb |
| >Q10 |
6987 (89.3%) 28.0Mb |
| >Q12 |
3634 (46.5%) 14.6Mb |
| >Q15 |
137 (1.8%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.5 (3786) |
| 2 |
18.1 (2434) |
| 3 |
17.6 (2442) |
| 4 |
17.5 (2730) |
| 5 |
17.1 (3874) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17288 (8.8) |
| 2 |
12910 (11.7) |
| 3 |
11907 (9.2) |
| 4 |
11750 (12.2) |
| 5 |
11074 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot