NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,334.8 |
| Mean read quality |
11.8 |
| Median read length |
3,258.0 |
| Median read quality |
12.7 |
| Number of reads |
22,285.0 |
| Read length N50 |
3,441.0 |
| STDEV read length |
845.3 |
| Total bases |
74,315,322.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22285 (100.0%) 74.3Mb |
| >Q7 |
22285 (100.0%) 74.3Mb |
| >Q10 |
21049 (94.5%) 70.2Mb |
| >Q12 |
15385 (69.0%) 51.5Mb |
| >Q15 |
506 (2.3%) 1.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (4379) |
| 2 |
17.6 (4184) |
| 3 |
17.5 (3197) |
| 4 |
17.3 (2482) |
| 5 |
17.0 (3800) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10328 (9.2) |
| 2 |
10252 (12.9) |
| 3 |
9980 (8.1) |
| 4 |
9973 (12.1) |
| 5 |
9601 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot