NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,568.3 |
| Mean read quality |
11.2 |
| Median read length |
3,449.5 |
| Median read quality |
12.2 |
| Number of reads |
752.0 |
| Read length N50 |
3,734.0 |
| STDEV read length |
972.1 |
| Total bases |
2,683,352.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
752 (100.0%) 2.7Mb |
| >Q7 |
752 (100.0%) 2.7Mb |
| >Q10 |
671 (89.2%) 2.4Mb |
| >Q12 |
428 (56.9%) 1.5Mb |
| >Q15 |
8 (1.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (3257) |
| 2 |
16.0 (4001) |
| 3 |
15.5 (4010) |
| 4 |
15.5 (3264) |
| 5 |
15.3 (3079) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8653 (13.7) |
| 2 |
8028 (12.6) |
| 3 |
7737 (13.9) |
| 4 |
7347 (12.4) |
| 5 |
7246 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot