NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,221.4 |
| Mean read quality |
11.4 |
| Median read length |
3,125.0 |
| Median read quality |
12.4 |
| Number of reads |
6,806.0 |
| Read length N50 |
3,337.0 |
| STDEV read length |
855.6 |
| Total bases |
21,924,947.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6806 (100.0%) 21.9Mb |
| >Q7 |
6806 (100.0%) 21.9Mb |
| >Q10 |
6094 (89.5%) 19.7Mb |
| >Q12 |
4013 (59.0%) 13.0Mb |
| >Q15 |
161 (2.4%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (3432) |
| 2 |
17.4 (2248) |
| 3 |
17.0 (3167) |
| 4 |
16.9 (3856) |
| 5 |
16.6 (5315) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7492 (12.0) |
| 2 |
7414 (15.4) |
| 3 |
7033 (12.7) |
| 4 |
6969 (12.3) |
| 5 |
6934 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot