NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,276.8 |
| Mean read quality |
11.4 |
| Median read length |
2,209.0 |
| Median read quality |
12.2 |
| Number of reads |
187.0 |
| Read length N50 |
2,383.0 |
| STDEV read length |
602.2 |
| Total bases |
425,770.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
187 (100.0%) 0.4Mb |
| >Q7 |
187 (100.0%) 0.4Mb |
| >Q10 |
172 (92.0%) 0.4Mb |
| >Q12 |
108 (57.8%) 0.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.7 (1738) |
| 2 |
14.6 (2183) |
| 3 |
14.4 (1932) |
| 4 |
14.2 (2342) |
| 5 |
14.2 (1444) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4231 (13.3) |
| 2 |
4016 (12.1) |
| 3 |
3861 (13.4) |
| 4 |
3666 (13.9) |
| 5 |
3646 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot