NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,011.6 |
| Mean read quality |
11.7 |
| Median read length |
3,863.5 |
| Median read quality |
12.7 |
| Number of reads |
3,708.0 |
| Read length N50 |
4,145.0 |
| STDEV read length |
1,019.2 |
| Total bases |
14,875,058.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3708 (100.0%) 14.9Mb |
| >Q7 |
3708 (100.0%) 14.9Mb |
| >Q10 |
3444 (92.9%) 13.8Mb |
| >Q12 |
2507 (67.6%) 10.1Mb |
| >Q15 |
55 (1.5%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (4347) |
| 2 |
17.2 (2900) |
| 3 |
17.0 (3227) |
| 4 |
16.0 (5353) |
| 5 |
16.0 (4547) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12128 (10.0) |
| 2 |
10787 (11.4) |
| 3 |
9913 (12.8) |
| 4 |
9348 (9.5) |
| 5 |
8726 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot