NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,136.6 |
| Mean read quality |
11.6 |
| Median read length |
3,047.0 |
| Median read quality |
12.5 |
| Number of reads |
1,328.0 |
| Read length N50 |
3,277.0 |
| STDEV read length |
943.5 |
| Total bases |
4,165,356.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1328 (100.0%) 4.2Mb |
| >Q7 |
1328 (100.0%) 4.2Mb |
| >Q10 |
1225 (92.2%) 3.8Mb |
| >Q12 |
839 (63.2%) 2.6Mb |
| >Q15 |
33 (2.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (3981) |
| 2 |
16.3 (4045) |
| 3 |
16.0 (2120) |
| 4 |
16.0 (2427) |
| 5 |
16.0 (2551) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8937 (9.0) |
| 2 |
8016 (7.8) |
| 3 |
7925 (11.7) |
| 4 |
7553 (10.6) |
| 5 |
6858 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot