NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,348.1 |
| Mean read quality |
10.5 |
| Median read length |
2,264.0 |
| Median read quality |
11.1 |
| Number of reads |
89.0 |
| Read length N50 |
3,918.0 |
| STDEV read length |
1,850.5 |
| Total bases |
208,978.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
89 (100.0%) 0.2Mb |
| >Q7 |
89 (100.0%) 0.2Mb |
| >Q10 |
75 (84.3%) 0.2Mb |
| >Q12 |
26 (29.2%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (2227) |
| 2 |
13.9 (2603) |
| 3 |
13.9 (801) |
| 4 |
13.7 (2224) |
| 5 |
13.5 (3273) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7685 (9.1) |
| 2 |
5703 (11.1) |
| 3 |
5571 (10.3) |
| 4 |
5529 (12.0) |
| 5 |
5342 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot