NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,017.9 |
| Mean read quality |
11.2 |
| Median read length |
2,954.5 |
| Median read quality |
12.2 |
| Number of reads |
2,418.0 |
| Read length N50 |
3,170.0 |
| STDEV read length |
928.4 |
| Total bases |
7,297,394.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2418 (100.0%) 7.3Mb |
| >Q7 |
2418 (100.0%) 7.3Mb |
| >Q10 |
2197 (90.9%) 6.7Mb |
| >Q12 |
1325 (54.8%) 4.0Mb |
| >Q15 |
5 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.4 (2443) |
| 2 |
15.2 (2254) |
| 3 |
15.2 (1958) |
| 4 |
15.2 (2500) |
| 5 |
15.1 (2073) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11508 (13.9) |
| 2 |
7965 (13.0) |
| 3 |
7936 (12.1) |
| 4 |
7608 (14.1) |
| 5 |
7342 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot