NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,522.7 |
| Mean read quality |
11.3 |
| Median read length |
2,442.0 |
| Median read quality |
12.2 |
| Number of reads |
14,352.0 |
| Read length N50 |
2,623.0 |
| STDEV read length |
738.9 |
| Total bases |
36,206,405.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
14352 (100.0%) 36.2Mb |
| >Q7 |
14352 (100.0%) 36.2Mb |
| >Q10 |
12902 (89.9%) 32.6Mb |
| >Q12 |
8055 (56.1%) 20.4Mb |
| >Q15 |
109 (0.8%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (2358) |
| 2 |
16.6 (1970) |
| 3 |
16.5 (1721) |
| 4 |
16.4 (2164) |
| 5 |
16.4 (2141) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10173 (12.2) |
| 2 |
8327 (8.9) |
| 3 |
7861 (7.9) |
| 4 |
7514 (8.0) |
| 5 |
7477 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot