NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,070.1 |
| Mean read quality |
11.2 |
| Median read length |
2,976.0 |
| Median read quality |
12.2 |
| Number of reads |
792.0 |
| Read length N50 |
3,245.0 |
| STDEV read length |
973.8 |
| Total bases |
2,431,528.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
792 (100.0%) 2.4Mb |
| >Q7 |
792 (100.0%) 2.4Mb |
| >Q10 |
714 (90.2%) 2.2Mb |
| >Q12 |
442 (55.8%) 1.3Mb |
| >Q15 |
2 (0.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.4 (4590) |
| 2 |
15.2 (4699) |
| 3 |
14.9 (1619) |
| 4 |
14.9 (2691) |
| 5 |
14.8 (1972) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8580 (7.2) |
| 2 |
8048 (9.3) |
| 3 |
7861 (10.9) |
| 4 |
7402 (11.5) |
| 5 |
7172 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot