NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
504.2 |
| Mean read quality |
10.3 |
| Median read length |
392.0 |
| Median read quality |
10.8 |
| Number of reads |
66.0 |
| Read length N50 |
536.0 |
| STDEV read length |
362.3 |
| Total bases |
33,278.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
66 (100.0%) 0.0Mb |
| >Q7 |
66 (100.0%) 0.0Mb |
| >Q10 |
49 (74.2%) 0.0Mb |
| >Q12 |
18 (27.3%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.6 (776) |
| 2 |
14.3 (816) |
| 3 |
14.0 (617) |
| 4 |
13.9 (2804) |
| 5 |
13.5 (446) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2804 (13.9) |
| 2 |
1518 (12.5) |
| 3 |
1104 (11.0) |
| 4 |
836 (12.4) |
| 5 |
816 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot