NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,564.3 |
| Mean read quality |
11.4 |
| Median read length |
2,502.0 |
| Median read quality |
12.4 |
| Number of reads |
2,601.0 |
| Read length N50 |
2,731.0 |
| STDEV read length |
866.2 |
| Total bases |
6,669,653.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2601 (100.0%) 6.7Mb |
| >Q7 |
2601 (100.0%) 6.7Mb |
| >Q10 |
2358 (90.7%) 6.0Mb |
| >Q12 |
1592 (61.2%) 4.1Mb |
| >Q15 |
64 (2.5%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (1883) |
| 2 |
16.9 (2355) |
| 3 |
16.6 (1876) |
| 4 |
16.5 (3627) |
| 5 |
16.4 (1873) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9077 (8.2) |
| 2 |
7655 (11.6) |
| 3 |
6866 (8.9) |
| 4 |
6290 (12.9) |
| 5 |
6070 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot