NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,571.6 |
| Mean read quality |
11.7 |
| Median read length |
2,556.0 |
| Median read quality |
12.5 |
| Number of reads |
375.0 |
| Read length N50 |
2,764.0 |
| STDEV read length |
862.9 |
| Total bases |
964,340.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
375 (100.0%) 1.0Mb |
| >Q7 |
375 (100.0%) 1.0Mb |
| >Q10 |
355 (94.7%) 0.9Mb |
| >Q12 |
232 (61.9%) 0.6Mb |
| >Q15 |
16 (4.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (2698) |
| 2 |
16.5 (2340) |
| 3 |
16.3 (1452) |
| 4 |
15.8 (2299) |
| 5 |
15.8 (2132) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6865 (14.3) |
| 2 |
5381 (11.5) |
| 3 |
5326 (14.2) |
| 4 |
5095 (8.7) |
| 5 |
5084 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot