NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,326.2 |
| Mean read quality |
11.7 |
| Median read length |
3,518.5 |
| Median read quality |
12.8 |
| Number of reads |
64.0 |
| Read length N50 |
3,723.0 |
| STDEV read length |
1,238.9 |
| Total bases |
212,876.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
64 (100.0%) 0.2Mb |
| >Q7 |
64 (100.0%) 0.2Mb |
| >Q10 |
59 (92.2%) 0.2Mb |
| >Q12 |
45 (70.3%) 0.2Mb |
| >Q15 |
1 (1.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (4634) |
| 2 |
15.0 (5767) |
| 3 |
14.8 (4271) |
| 4 |
14.7 (4269) |
| 5 |
14.4 (3247) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6129 (13.2) |
| 2 |
5880 (13.1) |
| 3 |
5767 (15.0) |
| 4 |
5721 (9.7) |
| 5 |
5367 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot