NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,907.3 |
| Mean read quality |
11.5 |
| Median read length |
2,769.0 |
| Median read quality |
12.6 |
| Number of reads |
20,762.0 |
| Read length N50 |
3,188.0 |
| STDEV read length |
1,224.6 |
| Total bases |
60,362,108.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20762 (100.0%) 60.4Mb |
| >Q7 |
20762 (100.0%) 60.4Mb |
| >Q10 |
18688 (90.0%) 53.9Mb |
| >Q12 |
13700 (66.0%) 39.8Mb |
| >Q15 |
408 (2.0%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (3276) |
| 2 |
17.7 (2486) |
| 3 |
17.6 (3676) |
| 4 |
17.4 (4893) |
| 5 |
17.0 (2172) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15549 (12.9) |
| 2 |
13837 (8.7) |
| 3 |
13462 (9.2) |
| 4 |
13411 (13.8) |
| 5 |
13374 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot