NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,821.9 |
| Mean read quality |
11.8 |
| Median read length |
3,734.0 |
| Median read quality |
12.8 |
| Number of reads |
8,979.0 |
| Read length N50 |
3,949.0 |
| STDEV read length |
994.2 |
| Total bases |
34,317,063.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8979 (100.0%) 34.3Mb |
| >Q7 |
8979 (100.0%) 34.3Mb |
| >Q10 |
8308 (92.5%) 31.8Mb |
| >Q12 |
6142 (68.4%) 23.6Mb |
| >Q15 |
283 (3.2%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (5636) |
| 2 |
17.3 (2563) |
| 3 |
17.3 (3179) |
| 4 |
17.2 (2193) |
| 5 |
17.1 (3044) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12857 (9.6) |
| 2 |
12358 (8.2) |
| 3 |
12039 (11.4) |
| 4 |
11742 (13.3) |
| 5 |
11186 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot