NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,490.4 |
| Mean read quality |
11.9 |
| Median read length |
2,444.5 |
| Median read quality |
12.8 |
| Number of reads |
382.0 |
| Read length N50 |
2,689.0 |
| STDEV read length |
880.7 |
| Total bases |
951,348.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
382 (100.0%) 1.0Mb |
| >Q7 |
382 (100.0%) 1.0Mb |
| >Q10 |
358 (93.7%) 0.9Mb |
| >Q12 |
278 (72.8%) 0.7Mb |
| >Q15 |
35 (9.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (2268) |
| 2 |
16.5 (3847) |
| 3 |
16.5 (3206) |
| 4 |
16.3 (2870) |
| 5 |
16.3 (2491) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6046 (10.7) |
| 2 |
6032 (9.5) |
| 3 |
5201 (8.9) |
| 4 |
5084 (10.5) |
| 5 |
5044 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot